Added AK's topotools plugin
Updated Axel's topotools plugin per reorganization of the bondtype/angletype
functionality in VMD.
added topotools docs to CVS
Added Axel's patch completing basic functionality for topotools.
sort/unique added.  sort uses tcl internal lsort (O(N log(n)).
Added new topotools files
Applied Axel's patch to fix a couple of typos in the topotools plugin.
AK's patch to make the topo command print a proper help message in
more cases (e.g.  no molecule loaded)
More topotools improvements from Axel.
Bugfixes and new features (can now read and write some LAMMPS topologies).
The LAMMPS support is incomplete and probably will never be perfect due
to incompatible atom kinds (granular, dipole, peridynamics)
Its getting better all the time.  Now it works for Axel's minimal
requirements (interchange between lammps and hoomd).
Added topolammps.tcl to CVS
Applied Axel's updates for topotools
AK's topotools typo fix.
AK's bugfixes/cleanup in topotools and support for reading velocities
from lammps data.
added a special case for adding bonds to an "all" selection resulting in massive speedups.
added checks for supported atom styles and writing out atom types
and residue names to lammps data files as comments, if available.
add support for numbers in exponential representation that have a capital 'E'
instead of a small 'e' to indicate the exponent. fixes reading the micelle data file.
fix stupid bug. velocities list has to be initialized outside the loop.
properly skip over pair, angle, dihedral and improper coefficients
in the topology file, handling empty and comment lines, too.
Merged in external tools to merge molecules and replicate unitcells.
Some refactoring of the sources into more logical pieces.
Place the "topo" frontend command into the TopoTools namespace
and 'export' it to the outside via an alias. The source is more
readable now, due to removal of most namespace qualifiers.
Updated documentation for mergemols and replicatemol.
fix undefined variable bug in replicatemol error message.