missing [sample_index] on line 47 in CreateInhouseProjects.ftl for SR demultiplexedSampleFastqChecksumFilenameSR inserted
Merge pull request #42 from ljohansson/master

added missing [sample_index]  at demultiplexedSampleFastqChecksumFilenameSR in CreateInhouseProjects.ftl
Changed path to workflowfil from 'workflowFile,${McDir}/workflow/in-house_workflow_realignmentAndSnpCalling.csv' to 'workflowFile,${McDir}/pipelines/production/NGS_alignment_SNP_calling/in-house_workflow_realignmentAndSnpCalling.csv' because of the changed location of this files in the pipeline move to molgenis-pipelines
Merge pull request #43 from ljohansson/master

changed location of workflowFile in in-house_parameters_gpfs.csv
Changed protocol for SingleRead. Symlink to rawdata/FastQ file was not correct.
Merge pull request #44 from Gerbenvandervries/master

Change in CreateInhouseProjects.ftl
changed getstatisticsscriptpath to newest location
Added CreateCoverageBedFile protocol to in-house pipeline
Merge pull request #45 from ljohansson/master

Changed getstatisticsscriptpath to newest location
Changed mismatches per lane, to max(0 or 1) mismatches per run
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Small bugfix in VcfToTable protocol
Merge pull request #46 from freerkvandijk/master

Added CreateCoverageBedFile protocol
Merge pull request #47 from Gerbenvandervries/master

Changed mismatches per lane, to max(0 or 1) mismatches per run
changed path to getStatisticsScript in parameter file
Merge pull request #48 from Gerbenvandervries/master

Changed path to getStatisticsScript in parameter file
added 2 <noparse> tags in BCLtoFqBcl2FastQ.ftl
Merge pull request #49 from Gerbenvandervries/master

added 2 <noparse> tags in BCLtoFqBcl2FastQ.ftl
Fixed the Columns and values in the hsmetrics in case the capturekit is None.
Merge pull request #50 from Gerbenvandervries/master

Fixed the Columns and values in the hsmetrics in case the capturekit … … …is None