new generator with template param for including Jacobians (passing unit tests)
Merge branch 'develop' of https://github.com/stan-dev/stan into feature/issue-112
rearranged code generation order to remove redundancy
refactored generated models to remove prob_grad_ad dependency, removed virtual funs, added templates for propto and jacobian_adjust_transform, updated tests, added utility class of static model functions
added models with .txt suffix to avoid recompilation with unwanted main --- need better way to do this
removed prob_grad_ad and stanc_model and tests, fixed other tests to pass with new models
Merge branch 'develop' of https://github.com/stan-dev/stan into feature/issue-112
moved grad_log_prob method to static util log_prob_grad, made most model methods and get_base1 const, removed get_base1 assign tests, added get_base1_lhs tests
moved is_unitialized() and fill() out of agrad and into math, with overloads in agrad, plus tests
added log_prob_propto function in model/util.hpp and switched model template parameter to last position to allow inference
simplified assign and moved to stan::math from stan::agrad, removed assign_to_var and specializations for agrad, more tests related to assign
removed commented out junk code from generator
cleaned up model generation code further by eliminating utility write methods and fixed bug in mcmc_writer by fishing the RNG through so that generated quantities could be replicated
fixed merge with develop, just usings in generator
Merge branch 'develop' of https://github.com/stan-dev/stan into feature/issue-112
Merge branch 'develop' of https://github.com/stan-dev/stan into develop
added includes to fix test-headers failure
Merge branch 'develop' of https://github.com/stan-dev/stan into feature/issue-112
Merge branch 'develop' into feature/issue-112
changed EXPECT_EQ to EXPECT_FLOAT_EQ for floating-point tests in reader_test