Adding isplant option to MS::Annotation.pm
Updating MS/Model.pm to accomodate isplant option and to allow for default to Unknown if not using classifiers
Fixed misuse of verbose function in MS/Biochemistry.pm, as well as allowing for addition of cues and accounting for cues lack of id field
Addition and refinement of three functions for balancing the mass, charge, and cues of the reactions, calculatiing their deltaG of reaction, and estimating thermodynamic reversibility.  Electrochemical potential and concentration gradients not yet implemented for transporter thermodynamics
Added some more functions for ms bio: addcuetable and computethermo
Updating genome buildmodel function to include isplant parameter
Refined the output to terminal of a few bio commands to reduce redundant messages