HMM forward/backward equations for X chr
HMM calcgenoprob for X chr
HMM estmap for X chr
Merge branch 'master' into Xchr
HMM for X chr: separate all_true_geno for X chr
simple versions of calc_geno_prob and estmap
First stab at BC/F2 functions for HMM for X chr
a few missing semi-colons
Fix template business for estmap and calc_geno_prob
Add a bunch of overrides in cross.d
A few typos and missing autos
Revised HMM code making cross_direction a fixed type
Merge branch 'master' into Xchr
bring the hmm cross.d unittests back, though they're not yet working
Moving stuff around
doc
Slightly nicer
Initialize array
Walking a list is safer
Do away with the second index