[BUGFIX] Fix FilePermissionUpdate SQL errors

If you have a new installation or already used the database analyser to
delete unnecessary fields the filePermissionUpdate throws SQL errors
because the old fields aren't available anymore.

Resolves: #52856
Releases: 6.2
Change-Id: Id74c7263d7686a574d128856fd7538dc110ba3bb
Reviewed-on: https://review.typo3.org/24808
Reviewed-by: Ernesto Baschny
Tested-by: Ernesto Baschny
Reviewed-by: Markus Klein
Tested-by: Markus Klein