skeleton implementation
Autoconf tweaks.
Um, forgot something...
some more autoconf
not the most elegant merge
Merge branch 'feature/BitmapIndex' of https://github.com/warelab/snapdragon into feature/BitmapIndex
Compilation errors (still skeletal bitmap functionality).
using mkstemp instead of tmpnam.
Upgraded GTest.
threadpool attempt
boost::lockfree::spsc_queue
no queue
removed premature optimizations
moved if out of loop
DIY inline and vector<kword_t>
merged with bitmap feature
bitmap indexing for kmers and counts
the implementation is here
buggy bitmap merge
Merge branch 'feature/BitmapIndex' of https://github.com/warelab/snapdragon into feature/BitmapIndex