First commit
first commit
first commit
Added code to determine stand of each sequence (relative to the first one added to the cluster)
Modified to include an option to specify a evalue cutoff. It also writes two output files now
first commit
Adds information about the minimum start and maximum end of the blast alignments for each sequence
Added a custom parser for Phylip files that allows longer names and removed concatination function

Including the ability to process multiple alignments was making the logic much more convoluted than it needed to be
Concatination of alignments is somewhat beyond format conversion and is better moved to a separate script
Added additional blast results to test ClusterHomologs.pl and renamed sequences in blast results and in corresponding fasta file
removed some old functionality to deal with nameless sequences which was causing confusion
First commit
Updated with info about recently committed scripts