Merge pull request #104 from mdijkstra/compute-bash

//Temporarily commented Test NG IncludeParameterFileTest.java; I'll work...
Added test-output to gitignore
Added security to the search controller
Added security to the search controller
Added index scheduling
Clean up and added method to check if datatype exists
Merge branch 'master' of https://github.com/molgenis/molgenis
upgrade bootstrap 2.2.2 to 2.3.1
update chose sprite (without updating chosen css/js)
add initial data explorer template
Merge pull request #105 from erwinwinder/master

Index scheduling and security
push pulled content, update data explorer template
rename template
fix css/js links
add query rules to entity collection request, add Qualifier to db autowiring
Merge pull request #106 from dennishendriksen/master

Initial data explorer UI + REST API query support
Add query rules to entity collection request
Merge pull request #107 from dennishendriksen/master

Add query rules to entity collection request
Scripts automatically (i) in their header source the environment.txt with parameters they (may) need and (ii) in footer save their environment by appending their output variables to that environment.txt.
Added new example