Database.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Web controller.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Server side stub.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Add MAKER2 generated gene prediction for two scaffolds of fire ant genome.

* Sample data for development.
* MAKER gives us GFF3.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
GFF3 module.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
RefSeq model.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Annotation model.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Task model.

TODO: consider using gene_id to track changes.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Parse GFF3 to RefSeq and Annotation objects.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Importer.

NTS: Sure now -- we don't need this or we don't need this here.  If a generic function to wrap transactions is needed, it should be a part of Sinama::Database or use directly from DataMapper.

TODO: convert this to gff file to database importer.  NOTE: this module should create tasks.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Afra#importer

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Afra#import

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Curation process.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Ensure Ruby 2.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
README.mkd

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
README: say Afra is being developed and add a copyright notice.

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>
Add .irbrc.

To launch Afra in irb:

    $ irb -I lib .irbrc

Signed-off-by: Anurag Priyam <anurag08priyam@gmail.com>