Hi Cindee,

Thanks for the comments, all of those look easy enough to fix. Also, I 
made a change to dualregress_userscript_example.py  so that instead of 
specifying the number of ICs in a template, it extracts them automatically.

It looks like things are starting so we're heading to the hospital soon. 
Once I'm back to work I'll make these changes and e-mail you about 
setting up a meeting though. Otherwise, I'll let you know how everything 
goes!

-Jeremy

> cindeem <mailto:notifications@github.com>
> Monday, February 04, 2013 1:12 PM
>
> In tools/run_image_qa.py:
>
> > +def CreateRegressors(outdir, art_output, num_vols):
> > + qa_file = os.path.join(outdir,'data_QA',art_output)
> > + outliers = np.loadtxt(qa_file, dtype=int)
> > + outliers = np.atleast_1d(outliers)
> > + outlier_array = np.zeros(num_vols,dtype=float)
> > + for i in range(len(outliers)):
> > + outlier_array[outliers[i]]=1
> > + outfile = os.path.join(outdir, 'data_QA', 'outliers_for_fsl.txt')
> > + outlier_array.tofile(outfile)
> > + np.savetxt(outfile, outlier_array, fmt='%i', delimiter=u'\t')
> > + print 'Saved %s'%outfile
> > + return outlier_array
> > +
> > +
> > +
> > +def CombineRegressors(mc_params, outlier_array):
>
> doc string for this one too
>
> —
> Reply to this email directly or view it on GitHub 
> <https://github.com/cindeem/connectivity/pull/2/files#r2883290>.
>