Added more sample alignments
More ruby like
Major update
Added more example alignments
Cleaned up code
fixing a bit in rasem file, adding a few commments
updating todo
test.rasem progress (does not work just saving progress)
loop properly fills color_intervals now
fixing newline substitution in sequences
Now coloring each pixel on a gradient based on that character's distribution, added some more comments (mostly for myself)
Modified runner to increase the pixel density of its converted png, along with using subshells for bash commands
Updated example images, moved them and their sequences to a directory
Added Trollop to runner to handle some shell commands, like pixel density in the final png