Initial changes without testing of the functions involving BWT vector B, now new functions to calculate and decompress S must be employed
Fixed some memory frees in dbwt.c
Added support for machine instruction bitcount operations on Intel sse4.2
Changed the preprocesssing in order to obtain SA and ISA from BWT
Included csalib. Refactored new BW_io.* files
Some modifications in the tests
Modified Makefile
Fixed csalib makefile
Fixed csalib makefile
Fixed csalib call from preprocess
Fixed csalib wrapper for gnu bwt aligner, fixed data types and mallocs in dbwt and csalib
Finished preprocessing, started new search engine
i
Removed gpu support started support for multiple runtimes
Added gpu support again
Added runtime headers to select the runtime
Changed directory structure
Changed directory structure
Changed directory structure
Changed directory structure, started runtime selection on compile time