Rework thumbnail handling

Since ids of media file are usually not continuous, the original file of thumbnail are
sparse. When there are big numbers files on ex\
ternal storage, the size of this file will be horrible.
Ex, when the id is 20000, then the .thumbnails/.thumbdata3-xx file will be 50000*10k = 488.28M.
Can refer http://stackoverflow.com/questions/12396715/android-huge-thumbdata4-file-in-dcim-folder
Because after 4.0, MediaProvider will scan any files, this will be a big problem. So I modify MiniThumbFile.java to avoid this.
According to the id, we now produce an index file. In this index file, one id will use BYTES_PER_MINTHUMB_INDEX(8) bytes in offset (i\
d+1)*BYTES_PER_MINTHUMB_INDEX. The data of these 8 bytes is the index of thumbnail file. The first BYTES_PER_MINTHUMB_INDEX bytes kee\
p next available index. And when you need insert a thumbnail, the index increase by 1. In this way, the block data in thumbnail file \
will be continuous. And thus unnecessary zero paddings will not be saved.

Change-Id: I66005dd69b0a5c8f4353bd7a8225d163a654fd2d
services: Fix the bug in NFC shutdown logic

nfcOff should be checked for NFC shutdown instead of radioOff,
which is used for radio status.

Change-Id: Iafd620dc89ae8bed7855e313676527d4de32cb7c
PackageManager: Let system-defined permissions take precedence over settings

If a permission was already present in the device's settings due to having
no prior system definition, and the system tried to take it over
(after a version upgrade, for example), it'd fail, since the saved
value would clobber the one previously read from the permissions XML.

This breaks system-behavior changes (gid grants, in particular) unless
the user performs a factory reset after upgrading, which isn't acceptable.

Change-Id: If2e44110f6db735ad29cdf1086e814bd1299e290
Audio: Fix abnormal keytone playback during silent mode changing

Change-Id: Icfc4003c9756b3c33578c137e59dc4a2b4f25647
Author: Chenyang Du <chenyang.du@intel.com>
Signed-off-by: Ertao Zhao <ertaox.zhao@intel.com>
Signed-off-by: Shuo Gao <shuo.gao@intel.com>
Signed-off-by: Bruce Beare <bruce.j.beare@intel.com>
Signed-off-by: Jack Ren <jack.ren@intel.com>
Author-tracking-BZ: 19084 4898