Initial restructuring of Mokuji core.
Fixing backend environment.
Merge branch 'master' into core-restructure
Scoping bug fixed in BaseDBUpdates.

* Fixed a scoping problem with older PHP version in BaseDBUpdates.
* Moved private helper function BaseDBUpdates::vtfn($version) to system helpers.
Epic folder moving going on.
URL parser 2 stronk though.
Made Initializer prettier, fixed URL class, removed other index.php files.
A little cleaning up.
Corrected namespace in apidocs.
Merge branch 'master' of github.com:Tuxion/mokuji

Conflicts:
	CHANGES.md
Modified existing functions to work with PDO:MySql.
Updated readme and package versions for the PDO changes.
Allowed FormBuilder class to be extended, switching private variables to protected.
Merge branch 'master' into core-restructure

Conflicts:
	init.php (solved in mokuji/system/dependencies/init/Tasks.php)
Fixed installing problems.
Extended autoloader to include component classes.
+ Regenerated API docs.
+ Removed many BaseDBUpdates loading statement.
Minor tweak in logo hiding.
Working on an upgrade script for the core rework.
Fixed a bug when installing with the new PDO setup.
+ Also removed some Tuxion CMS references.
Merge branch 'master' into core-restructure
Started implementing file transfer actions.