[#60813854] Maintain measure file layout during execution

Also, make sure that 'tests' are not copied over and that standardClean
deletes entire required folder structure.
[#60813854] Call standardClean() prior to maximumClean()
[#60813854] Fix gcc/linux build error
Merge pull request #720 from NREL/60813854-ProperMeasureFolderLayout

60813854 proper measure folder layout