Added plot-annoheatmap.R and modified R-3 tools dir
Update bedtools in vm
EdgeR-multivariate.R and ngs-dea-edger-RNA.R to R-3
Made new R-folder in common and moved bed-utils.R there.
BlastN updated.
BlastN parameters.
Add python cpdb tool and remove beanshell
Fix cpdb sadl parameters and remove beanshell from runtimes.xml
Merge branch 'master' into R30

Conflicts:
	src/main/manual/plot-annoheatmap.html
	src/main/modules/microarray/microarray-module.xml
	src/main/modules/ngs/R-2.15/edgeR-multivariate.R
	src/main/modules/ngs/R-2.15/ngs-dea-edger-RNA.R
	src/main/modules/ngs/ngs-module.xml