Yes, your suggested change fixed the test.  I will commit shortly.  It does print a deprecation warning that I believe is expected:

```
$ theano-nose theano/tensor/tests/test_naacl09.py
/Users/sasha/PycharmProjects/Theano/theano/tensor/tests/test_naacl09.py:369: UserWarning: theano modules are deprecated and will be removed in release 0.7
  super(ConvolutionalMLP, self).__init__()
/Users/sasha/PycharmProjects/Theano/theano/tensor/tests/test_naacl09.py:69: UserWarning: RandomStreams is deprecated and will be removed in release 0.7. Use shared_randomstreams.RandomStreams or MRG_RandomStreams instead.
  self.random = T.randomstreams.RandomStreams()
.
----------------------------------------------------------------------
Ran 1 test in 34.265s

OK
```