remove options(warn=2) from doRUnit.R
Merge branch 'collab'

* collab:
  remove options(warn=2) from doRUnit.R

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SNPchip@69813 bc3139a8-67e5-0310-9ffc-ced21a209358
Bump all packages before creating 2.11 branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SNPchip@70050 bc3139a8-67e5-0310-9ffc-ced21a209358
bump package versions after creating 2.11 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SNPchip@70052 bc3139a8-67e5-0310-9ffc-ced21a209358
add session info to vignette
update PlottingIdiograms vignette
change import directive from methods pkg
@<- has been moved from methods to base, so it no longer needs to
be imported in package NAMESPACEs.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SNPchip@72298 bc3139a8-67e5-0310-9ffc-ced21a209358
export dataFrameFromRange
coerce gSetList to SummarizedExperiment. Arrange lattice displays of log r ratios and bafs.
update latticeFigs and dataFrameFromSummarizedExperiment (uses reduce...)
coersion methods for dataFrame
docs for arrangeFigs and dataFrame
update dependencies
merge master with collab

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SNPchip@72707 bc3139a8-67e5-0310-9ffc-ced21a209358