doIGVshots.pl

Supply the script with a bedfile and it will write a IGV batch script that would take snapshot of region annotated by the bedfile.

To use the script,

./doIGVshots.pl -i <bedfile> -o <outputfile> -s <xmlsession> -d <snapshot_directory> 

bedfile must not contain any header information and must not contain any empty lines.

Cheers,
Quek