add refs for hash size in assembly

update line endings
add refs for hash size in assembly

update line endings

hyperlink refs and adjust spacing
Merge branch 'cf'
update figures
Merge branch 'cf'
Merge branch 'ae' into cf

Conflicts:
	foxtail_linkage.tex
update consensus map subsetion label from previous merge
Merge branch 'cf'
update lap figure
Merge branch 'cf'
grayscale figs
Merge branch 'cf'
spelling
Merge branch 'cf'
intro additions and edits
Merge branch 'cf'
last night's changes
git commit pu