Added code to generalize the contig operations
Removed copy to local string and the fixing part of the overlapping pointer
Added dynamic size for contigs
Added checks for reverse-consistency
Merged packingDNAseq libs
fixed indices declarations
Added debug messages and checked correctness
Removed debugging messages and checked correctness
Added more code to handle storage of lex smaller kmers
Added code to support sunc order based on THREAD ids (needed for general concatenating protocol)
Fully functional version for the parallel De-Bruijn graph traversal
Added version with "relaxed" sync protocol (#define SYNC_PROTOCOL)
Added conditional definition of aux variables for SYNC_PROTOCOL
Used UPC for I/O
Added overlapping I/O with building the hash table
Added timers for benchmarking reasons
Commit before changeing to box of pointers
After using box of pointers
Got e_coli working (still have debug messages)
Cleaning up code