Partial work on geting Vai
Added structure for doing viaLinks
Merge branch 'develop' into Christian
Merge branch 'develop' into Christian

Fixed Conflicts:
	org.bridgedb.uri.sql/test/org/bridgedb/uri/UriListenerTest.java
Holding file for some transative code
Merge branch 'develop' into Christian
Renamed TranstiveFinder
Transative finder work in progress.
Automatic Transative Creator
Ignore Test Directory
Transative working
SQLUriMapper through a factory and UriPattern from SQL
Added in deprecate WS method
Updated APi doc
Simplifed mapUri and added docs
Load from URIs
Removed debug statements