Removing the todos and changing mehmet's answers to just comments.
Zoltan2: Optionally use Aztec's RCM when AztecOO is there and lno_t is int.
Work in progress.
Zoltan2: Make --outputFile option write permutation (and permuted GIDs) to file.
Zoltan2: PermutedGIDs not computed in ordering, so take it out of test.
Revert "Zoltan2: Optionally use Aztec's RCM when AztecOO is there and lno_t is int." We don't want to use Aztec's f77 code.

This reverts commit 7fcc46f1d93608d826a8a04f69ab215e55aca02f.
Tpetra: CrsMatrix: Fixed bug in {import,export}AndFillComplete.

The code in question was assuming that LO == int.  Some users like
to experiment with LO == long, in which case the code in question
would be incorrect.  This sort of bug tends to result from hasty
ports from Epetra.

Build/Test Cases Summary
Enabled Packages: Tpetra
0) MPI_DEBUG => passed: passed=65,notpassed=0 (1.29 min)
1) SERIAL_RELEASE => passed: passed=50,notpassed=0 (5.59 min)
 Minor clean up.
Merge branch 'master' of software.sandia.gov:/space/git/Trilinos
Epetra64: changes made to support 64-bit EpetraExt and Ifpack.
Code works in multiple modes (32 only, 64 only, 32 and 64).
Amesos: changes made to support 64-bit EpetraExt and Ifpack tests.
Galeri: changes made to support 64-bit EpetraExt and Ifpack tests.
Code works in multiple modes (32 only, 64 only, 32 and 64).
EpetraExt: changes made to support 64-bit EpetraExt and Ifpack.
Code works in multiple modes (32 only, 64 only, 32 and 64).
Ifpack: changes made to support 64-bit EpetraExt and Ifpack.
Code works in multiple modes (32 only, 64 only, 32 and 64).

Build/Test Cases Summary
Enabled Packages: Epetra, Teuchos
Disabled Packages: SEACAS,Sundance,STK
Enabled all Forward Packages
0) MPI_DEBUG => FAILED: passed=1729,notpassed=64 => Not ready to push! (48.64 min)
1) SERIAL_RELEASE => passed: passed=1700,notpassed=0 (62.70 min)
Other local commits for this build/test group: 0571311, da0b89d, c3d832e, 47135cd
WARNING: Forced the push!
Ifpack2: avoid getting deprecated warnings from RILUK::computeCondEst

We were getting these warnings even if we didn't actually call the
function in the user code. The problem was that there were two of those,
and one called another, which resulted in warning during instantiation.
MueLu: warning fix
 Another round of formatting changes.
Merge branch 'master' of software.sandia.gov:/space/git/Trilinos
Merge branch 'master' of software.sandia.gov:/space/git/Trilinos
Panzer: cleanup for clang compiler warnings
MueLu: fixed indexBase=1 issue in Rebalancing

Reported by Travis Fisher, we used incorrect indexBase for calculating
number of parts to receive. We should not use default index base there,
as GIDs correspond to processor ids.