Issue #348 - Initial move to resources dir
Issue #348 - Move Drupal core into docroot/
Issue #348 - Update gitignore for new layout
Issue #348 - Update the README with descriptions of the directories
Issue #348 - Patches should be in root of repo.
Issue #348 - Temporarily add docroot/files.
Issue #348 - Remove docroot/files from VCS tracking
Merge pull request #351 from kostajh/348-boilerplate

Re-organize repo

I'll do just a little followup after pulling.