updated the find cyclopts cmake file to add a cyclopts_root_dir variable and updated the readme for installation instructions
updated headings to conform to the standard described in: http://sphinx-doc.org/rest.html#sections
merging previous work on updating cmake and readme
fixed spelling errors and rst typo in the license section
re-fix rst typo
revamped the readme to match the cyclopts install guid style. updated findcyclopts and findcoin cmake files
fixed typos and cleaned up links
added dependency note on boost system
updated readme
makes all cyclus deps apt-gettable. General buildsystem cleanups and updated install instructions
fixes readme?
Merge pull request #439 from katyhuff/readme_fix

fixes readme

It's not clear to me (Matt) why the header doesn't work.
added a test for the behavior that shouldn't give nan. It currently fails. Now,
to make it pass.
decided the test should give 0 instead of 1. Fixes nan's returned.
applied katy's atom fraction nan patch with slight implementation tweaks, also included a guard in the mass fraction function
Merge branch 'atom-frac-bugfix' into develop

This fixes an issue with the compmap's massfraction and atomfraction interface for compmaps where isotopes exist but no quantity is applied. It will now correctly return 0 instead of NaN.
Merge branch 'domain_model' of github.com:cyclus/cyclus into domain_merge
Merge branch 'domain_merge' into domain_model
converted old use case numbers to refs.
Merge branch 'domain_model' of github.com:cyclus/cyclus into domain_model