first set of updates - continued hacking to commence
move and rename files into functions directory
start moving toward common syntax including camelCase instead of using . or _
specify array express data entities that already are stored in Synapse
continue syntactical edits - still more to do within functions/analysisFunctions.R
minor update of README.md
syntax updates for paper.R -- as well as removing of analysisFunctions.R from functions directory
Merge branch 'dev' of https://github.com/Sage-Bionetworks/CRC-RASness into dev
fixed typo
additional cleanup of functions - also get rid of multigsea functions which does not seem to be used
update README.md in order to better describe scope of project
minor README.md updates
remove deprecated .rnw version of analysis paper
add description of each functions/*Functions.R program
makeRocPlot had syntax error - fixed for now but may need to be revisited
update paper.R rGithubClient call to point to dev branch
syntax consistency and additional file to ignore
updates to dataFunctions.R moving toward Synapse-centric storage
move towards dataProcessing.R and functions for preprocessing steps
reset of repository -- starting from scratch with data functions