remove g_ReadSeq2Index to speed up
speed up
add selfchain
perfectmatch and small variants
makefile
static link
return to regular makefile
-A 0 -B 0
commit improvements oct 24 2013, read selection and -A 0 -B 0
Merge branch 'master' into optimized

Conflicts:
	src/Makefile
	src/bddata.cpp
	src/farend_searcher.cpp
	src/pindel.cpp
	src/read_buffer.cpp