Changed the name of the BEDTOOLS variable to INTERSECTBED for clarity
Now automatically generates the config.rb by looking for the dependencies in the current PATH, if not found in PATH it reports an error
Changed the BEDTOOLS variable name for better clarity
Changed installation instructions
Forgot to uncomment 2 lines
Added info on installing R packages.
Removes whitespace lines from the input file which threw off intersectBed and kept reporting as if there were no variants. This is especially the case when people truncate their initial files.
Merge branch 'master' of github.com:asifrim/eXtasy