Ignore test results
More updates to instructions.
All output now generated in directory current directory
Added some basic tests

Still a work in progress
Added monolithic test of pipeline
Updated Instructions
Updated .gitignore
Added consensus conversion
Changed RADnome naming convension
Correctly orient R1 contigs.
Provisional single end R1 processing
Added early local assembly code
Remove unused class method
General code cleanup
Added pipeline flowchart

Provisional
Image test
Updated README
New pipeline image
Center image?
Center Image!