Restructured filesystem
Refactoring the filestructure
Implemented a more flexible GO terms parser.
Added reaction and reaction step parser to the reactome.org parsers
Separated GO terms and relations between GO terms to avoid issues upon
insertion into the neo4j
- corrected adress in configs
- wrote 2dict uniprot parser
Finished UniprotParser (python dictionary version)
Updated graph declaration cluster
written the first version of GO and UNIPROT importers, added the Pathway
and Pathway_Step Insertion to the reactome parser
Updated the docs for the GO and UNIPROT parsers for neo4j
debugged
Debugged
debugged
added "is_modified_by" relation
Finalized the DatabaseGraph declarations
Finalized the importers section (adding HiNT from Yu Lab)
Actually added the HiNT importer
Started the matrix extraction procedure
Created and tested the matrix puller class
updated declarations