added eclipse files to gitignore
Merge remote-tracking branch 'upstream/master'
Merge remote-tracking branch 'thehyve/master'
removed Eclipse generated files
added target-eclipse directory to .gitignore
removed in-code referances to theHyve repository
upgraded grails to 2.2.4
added transmart Foundation archive referance for fetching transmart-core-db
added *.zip to git ignore to remove deploy builds from the untracked file list
changed repository to public so that, when we switch to release version, we don't have to change the repository description
made a trivial, non-functional, change to test automatic deployment from Bamboo
made a trivial, non-functional, change to test triggering of Bamboo from github
Update PatientSetQueryBuilderService.groovy

The facts containing the concept_cd 'SECURITY' should never be retreived (Patient set can contain patient from other nodes if not expluded). I do not know if this is the best place to put it, but I hope you will have a better idea. Another aproache would be to have some sort of EXCLUDE constraint which, than, would allow us to move the constraint into the JS file for subset query.
Merge pull request #3 from fguitton/patch-2

Do select patients based on security concepts.
Remove and ignore .classpath & .project
Merge transmart/master into thehyve/master

Conflicts:
	.gitignore
	application.properties
	grails-app/conf/BuildConfig.groovy