Fixed a few tests.
Merge remote-tracking branch 'upstream/dev' into disable-array-connects
Merge pull request #1419 from swryan/gui

gui - update geometry viewer, implement check boxes for visualization options
Merge pull request #1420 from swryan/gui

gui - remove context menu from file tree background div,
Merge remote-tracking branch 'upstream/dev' into disable-array-connects
Merge pull request #1421 from crobinsonut/disable-array-connects

Disable array connects (fixed)