updated ur submodule to 6b0fbd1
Grab the latest build using accessor to not care about sort order.
clinseq - add option to SummarizeBuilds.t to allow full test of illumina_info as used in the clinseq pipeline
clinseq - blessing new test build to accomodate expected update to illumina_info
fix a version max bug
updated ur submodule to 9366b9e
updated ur submodule to bb4c031
add Genome::Model::Pair
Merge branch 'master' of ssh://git/srv/git/genome
Update types of Varscan Consensus properties
Cleanup whitespace in Varscan Consensus
Fix RealignWithVcf.xml links
Extract java_command_line method
Refactor gmt varscan consensus and add tests
Enable pausing by listening for the "sequence_nextval" signal
Revert "increase requested memory from LSF for the Pindel job"

This reverts commit 5dd8ff26cd3bb16bfb3cdfe1d9a0ea2d987bc8b0.  This is a
Workflow server so cannot and should not have this much memory
requested.  This was discovered because it was recently changed to run
in the workflow queue instead of in the long queue.

Conflicts:
	lib/perl/Genome/Model/Tools/DetectVariants2/Pindel.pm
change the workflow queue for DV2 to long
updated input options
restore old default LSF queues in DV2

The argument here is that we minimize the overlap of parents and
children in the same queue.

workflow: Builds
apipe: DV2 Child Workflow and Workers
long: DV2 Dispatcher
Allowing zero size outputs, as this is the expected behavior when there is no coverage for any site