Committer: Ryan McCormick

 On branch master
 Changes to be committed:
   (use "git reset HEAD <file>..." to unstage)

	modified:   Makefile
	modified:   Makefile_x86_64
	modified:   SNP.cpp
	modified:   SNP.h
	new file:   biopRefAllele.cpp
	new file:   biopRefAllele.h
	modified:   stacksDB.cpp
	modified:   stacksDB.h
	modified:   stacksToVCF.cpp