Overhauled stylesheet.
Update scripts.
Remove JavaScript.
Overhaul test document.
Add MathJax as a submodule (v2.2)
Update MathJax to v2.2-latest (Wed, 22 May 2013 15:10:10 -0400)
Restored MathJax functionality.
Offload configuration JavaScript.
Make HTML output more consistent between sh/bat scripts.
Make the local MathJax the default.

You will need to check out the Git submodule:

    git submodule update --init --recursive --force
Add .gitignore
Restructure directories a bit.
Update MathJax configuration.
Touch-up styling around headers and math.
Fix conversion of files in same directory.
Update README for v1.0 release.