added deprecation message to casava
created wrapper for getsize
rectified numbers for non-paired-end runs in multiplex-qc
Merge pull request #303 from b97pla/develop

Develop
fixed flag script
fixed a default value not being cleared between function calls
Merge pull request #304 from b97pla/develop

fixed a default value not being cleared between function calls
Merge branch 'master' of github.com:SciLifeLab/scilifelab
flag script fixed
Merge pull request #305 from senthil10/master

Fixed flagging script