Release log update
Encode release log update
Added upstreamGeneTbl and upstreamMaf fields for those assemblies whose /multiz#way/maf directories were either missing or outdated (redmine #11575)
Merge branch 'master' of hgwdev.sdsc.edu:/data/git/kent
When user selects Artificial Example Variants, force genome-wide search
because the example variants often fall outside of the cart position range.
refs #11110
Fixing incorrect comment found by Brian L. refs #11200
trying to find reasonable limits for warning for protein and translated dnax; improving warn message; fixes #5798
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
f8bcbbee didn't go far enough to completely fix #11787 -- I forgot to
account for changing chromosomes.
fixes #11787
refs #11775
Refining a 10-year-old kludge for a few tracks that have thickStart=thickEnd=0,
but want thick items.  There aren't many, but they include wgRna in hg18 and hg19,
and hg18.ncRna.  Without this additional check for item start != 0, it's possible
for the kludge to falsely trigger on items that have thickStart=thickEnd=chromStart
when chromStart just happens to be 0, for example in DGV.  Of the remaining tracks
that need this kludge, none seem to have chromStart=0, so this seems to take care of
both new and old tracks.  In the long term, it would be best for all tables to
just have thickStart=chromStart and thickEnd=chromEnd if they want thick items.
fixes #11870
Merge remote-tracking branch: upstream/master