remove useless swig directives

git-svn-id: https://svn.salilab.org/imp/trunk@16315 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
clean up atom::Selection

git-svn-id: https://svn.salilab.org/imp/trunk@16316 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
allow computation of rmsd on selection, closing #111

git-svn-id: https://svn.salilab.org/imp/trunk@16317 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
more thorough test of overloading

git-svn-id: https://svn.salilab.org/imp/trunk@16318 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
don't forget to add radii to particles

git-svn-id: https://svn.salilab.org/imp/trunk@16319 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
move distance below Selection

git-svn-id: https://svn.salilab.org/imp/trunk@16320 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make swig have to work less hard

git-svn-id: https://svn.salilab.org/imp/trunk@16321 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix use of setup function in benchmarks

git-svn-id: https://svn.salilab.org/imp/trunk@16322 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove unused variable

git-svn-id: https://svn.salilab.org/imp/trunk@16323 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove unsable dof from bool flags

git-svn-id: https://svn.salilab.org/imp/trunk@16324 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
handle older boost versions

git-svn-id: https://svn.salilab.org/imp/trunk@16325 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
resolve circular #include

git-svn-id: https://svn.salilab.org/imp/trunk@16326 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
suppress warnings

git-svn-id: https://svn.salilab.org/imp/trunk@16327 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
dropped notify somewhere along the way

git-svn-id: https://svn.salilab.org/imp/trunk@16328 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
quote arguments to cmake

git-svn-id: https://svn.salilab.org/imp/trunk@16329 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add root to using decl

git-svn-id: https://svn.salilab.org/imp/trunk@16330 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
use alphabetical order in all header

git-svn-id: https://svn.salilab.org/imp/trunk@16331 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add missing #include

git-svn-id: https://svn.salilab.org/imp/trunk@16332 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix flags

git-svn-id: https://svn.salilab.org/imp/trunk@16333 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix execute bit

git-svn-id: https://svn.salilab.org/imp/trunk@16334 e91f8c7b-0e32-4433-a9ac-4502d39a4eab