Major restructuring of project tree
Added files to do some postprocessing
Adjusted names of files and modules in accordance with new directory structure
Added new files to follow new directory structure
Added existing measurements to measurements file
Added existing stats functions to new statistics file
Added some code to parse basic xml input options
Moved xml handle for better filename
Modified run script to do basic updates, using settings from xml input.
Added xml parsing of measurement settings.
Added some module init files to root and interfaces.
Added some helper functions to save repetition of code and hopefully clean things up
Started implementation of helper functions and added extra code to aid in dictionary conversions
Begun adding helper functions to parsing code
Updated xml parsing to use helper functions
Moved stout smearing parameter to functions where it's used.
Fixed some run time errors in xml parsing
Put lattice interface in class.
Added measurement code and put everything in main function.
Updated to bring in line with new directory structure