add ConvertDativeBonds to pybel
Fix missing lpmdformat.cpp
Pybel residue support
Fix bug in --filter parsing (Oleksii Balinskyi)
Merge pull request #2 from bgruening/pybel

Add ConvertDativeBonds to pybel
Merge pull request #1 from mwojcikowski/master

Fix missing LPMD file in src/format
Fix compile error with lpmdformat.

Loop over atoms in ::WriteMolecule() was incorrect
and OBMol::GetAtom() was called with an invalid variable.
Fix typo in OOP bending evaluation.

Bug found by Athanasios Anthopoulos <AnthopoulosA@cardiff.ac.uk>.
Fix documentation of residues in pybel
Merge pull request #4 from mwojcikowski/pybel-residue-devel

Fix documentation of residues in pybel
Try again - fix bug in --filter parsing
Merge branch 'master' of https://github.com/openbabel/openbabel
GUI with  wxWidgets not using std streams

Link errors with Visual Studio which may have been moving to VC10 or
wxWidgets 2.9.2. Fixed by compiling wxWidgets with wxUSE_STD_IOSTREAM=0,
and replacing wxStreamToTextRedirector() in OBGUI.cpp.
Ignore .pyc, .pyo, etc. from python testing.
Change output flag to avoid stomping on 'm' option.

Avoids error messages from OBConversion about the override
of the 'm' output flag.
Clear the ifs stream flags in the outformat reader.

Otherwise the real format reader fails to read the stream in
rare instances.
Fix tautology reported by clang C++.

If statement with (strlen(line) >= 0) is always true.
Revised to > 0, which was the intended meaning.
Patch from Magnus Lundborg reported to mailing list.

pH model on amidine using -p 7.4 would leave the result uncharged.
Fix potential NULL deference errors indicated by Clang.

Added some "defensive" statements to check for NULLs before
dereferencing. Fixes issues flagged by Clang static analyzer.
Merge pull request #5 from dlonie/clear-stream-flags

Clear the ifs stream flags in the outformat reader.