- Added a flag for function 'lookupPileup' to select tumors ('T', default) or normal
- Added batch version of lookupPileup, lookupPileup_batch(), not requiring sample id
- Added new function lookupPileup_indel_batch: search original pileup for indels
Add .gitignore for NGS/pipeline
Add .gitignore for Integration/cgi
Merge branch 'master' of https://github.com/SMC1/JK1
Added .gitignore files