Binomial window score changes
added scoring for enrichment within gene to binomial peak caller
window scores bug
merging with repository
Merge branch 'master' of https://github.com/mgarber/scriptureV2.git
Merge branch 'master' of https://github.com/mgarber/scriptureV2.git

Conflicts:
	src/java/nextgen/core/annotation/Gene.java
New peak calling classes
changes to binomial score
added functions to scan stat score