New branch that uses Bob Harris's new lastz repeat masking strategy,
and which puts lastz as an external tool in cactus - renaming all run
lastz as "cactus_lastz". This makes version tracking easier.
Not working while I work out giving multiple target files.
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Working, but not sure if correct.
Fix
Fixing case with multiple chunks
Adding parameter to adjust number of matches required to mask sequence
by proportion of the genome sampled.
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Added tests which check cactus_lastzRepeatMask.py
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Making new default parameters for lastz repeat masking preprocessing
Reducing runtime of this test.
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