Workflow implementation, preprocsess rna added, cal targets added and new workflow_consumer implementation foor extra search splice junction
Add workflow_functions.c/.h
Comments extrae functions
Resolves conflicts with hmartinez
Cleans code
Update include header: from bioformats/bam-sam to bioformats/bam
Submodules updated to last release
Update submodules
pull from upstream and fixed conflicts
Updated submodules
fixed cs_server.c