[NOP] fixed cpplint errors; mostly formating

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11784 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] VS9 compilation error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11785 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] removed PeakPickerRapid again


git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11786 6adb6e08-d915-0410-941f-83917bcadc18
[VISUAL,FIX] fix segfault when opening certain mzML files

- Fix segfault in SpectraViewWidget: when storing a chromatogram in
  TOPPView and re-opening it again using TOPPView, it can lead to a
  segfault. This is fixed by checking whether the tree item was really
  initialized.
- fix initialization of LayerData

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11787 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] next attempt to fix dll export on windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11788 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] next attempt to fix dll export on windows

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11789 6adb6e08-d915-0410-941f-83917bcadc18
[DOC,FIX] fixed typos/improved parameter documentation

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11790 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] map.at() replaced

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11791 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] fixed clang compile error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11792 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] fixed error message for invalid range parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11793 6adb6e08-d915-0410-941f-83917bcadc18
[PARAM] switched meaning of intensity normalization flag and added a parameter limiting the number of precursors per feature

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11794 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] fixed segfaults caused by accessing missing data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11795 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] avoid unnecessary copies in 'pickExperiment(MSExperiment...)', some small improvements

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11796 6adb6e08-d915-0410-941f-83917bcadc18
[FEATURE,PARAM,TEST] added functionality for filtering peptide IDs by precursor RT and m/z

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11797 6adb6e08-d915-0410-941f-83917bcadc18
[FEATURE] new TOPP tool for feature detection based on peptide IDs and OpenSwath algorithms (still experimental)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11798 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] fix for VS9 build problem with RNPxlModGenerator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11799 6adb6e08-d915-0410-941f-83917bcadc18
added namespace to generated qcML files

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11800 6adb6e08-d915-0410-941f-83917bcadc18
[FEATURE,PARAM] added options to select reference RT for peptides, plus minor changes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11801 6adb6e08-d915-0410-941f-83917bcadc18
changed mzQualML to qcML everywhere, changed capitalization of tags in the format, also added the corresponding (current) schema version to the SCHEMAS directory

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11802 6adb6e08-d915-0410-941f-83917bcadc18
qcML:added additional table tag around table structure

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11803 6adb6e08-d915-0410-941f-83917bcadc18