update clinseq to intersect RNA fusions with DNA SV's only if WGS build is specified
use build variable
Updated class browser cache.
Updated `genome` tab completion.
Updated `gmt` tab completion.
added MakecircosPlot.pm to the clinseq pipeline
WorkflowBuilder bug fix. It would break when using both parallel_by/is_many and singular links to the same operation.
Merge branch 'workflowbuilder' into gb_master
CQID: create models with user_name apipe-builder
Several extract method refactorings
compare_ok will replace all regex matches on the line
Fully test the archive creation and a small refactor
Merge branch 'fireteam2' into gb_master
Update test based on production db change
Merge branch 'fireteam2' into gb_master
Add docs for the command line
Merge branch 'fireteam2' into gb_master