moved header files into source directory for better structure
moved header files into source directory for better structure
moved header files into source directory for better structure
moved header files into source directory for better structure
moved header files into source directory for better strucutre
tidied up mainfludag and the way files were read and set up, removed unessessary or obfusciated calls
minor changes to function calls as part of testing
added custom rfluka takes additional argument "-d" to define any h5m filename, which then copies file to dagmc.h5m
Merge branch 'fludagwork' of https://github.com/svalinn/DAGMC into fludagwork

Conflicts:
	FluDAG/src/cpp/fluka_funcs.cpp