building blocks for going from multiple protein files to blastp results
mocked out tests for blast, cdhit wrappers and combined proteome
Filter out sequences with too many unknowns
bringing together first steps of pan genome script
fix for makeblastdb temp directory type validation error plus tests
remove description from sequences in fasta file
Create GG file for orthomcl
filter out logging output
remove pan genome files
Merge branch 'blast_all_against_all'
remove unneeded pan genome files
allow for viruses
Merge pull request #25 from andrewjpage/master

Allow for kingdom to be passed in