FIX: "--transpose" shouldn't be necessary when reading outoput of dof2mat tool.


git-svn-id: https://www.nitrc.org/svn/cmtk/trunk@5032 42a5c34f-2066-0410-bec5-ba365beb4995
CHG: for now, turn off NIFTI orientation fix (which still needs thorough testing) so we can focus on fixing some other stuff first.


git-svn-id: https://www.nitrc.org/svn/cmtk/trunk@5033 42a5c34f-2066-0410-bec5-ba365beb4995