HMM forward/backward equations for X chr
HMM calcgenoprob for X chr
HMM estmap for X chr
Merge branch 'master' into Xchr
HMM for X chr: separate all_true_geno for X chr
simple versions of calc_geno_prob and estmap
First stab at BC/F2 functions for HMM for X chr
a few missing semi-colons
Fix template business for estmap and calc_geno_prob
Add a bunch of overrides in cross.d
A few typos and missing autos
Revised HMM code making cross_direction a fixed type
Merge branch 'master' into Xchr
bring the hmm cross.d unittests back, though they're not yet working
test_scanone_*: is_any_phenotype_missing was renamed
Merge branch 'master' into xchr
Update cross_unittest.d with X chr stuff
Cross.all_true_geno -> Cross.all_true_geno_A in some unit tests
unit tests for hmm bits for BC X chr
F2.emit() -> emitA, emitX