BUG: 3060. Made 
const std::vector<vtkMRMLDisplayNode*>& vtkMRMLDisplayableNode::GetDisplayNodes();
 - Obsolete
 utility function that provides an unsafe API. Please use GetNumberOfDisplayNodes() and GetNthDisplayNode() instead 

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21898 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: 2916. Moved vtkSlicerModelsLogicAutoRemoveTest into the data module testing directory and use a datamodule logic instead of a models logic. Removed unused AutoRemoveDisplayAndStorageNodes  property of vtkSlicerModelsModuleLogic.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21899 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: 3009. Updated vtkMRMLScalarVolumeDisplayNode visualization pipeline to fix alpha compositing problem.
See diagram in http://na-mic.org/Mantis/view.php?id=3009 for more details.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21900 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: 2970. Reverted changes to Chart colormaps.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21901 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: Fix lost on focus when modifying spinbox

Previously, the spinbox would lose focus when modifying the value due to
an update by the node. Using the new ctkSpinBox that actually checks
if the values are the same before updating fixes this.

See Issue #2986

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21902 3bd1e089-480b-0410-8dfb-8563597acbee
STYLE: Reorder CLI description XML elements

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21903 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Add drag&drop support for registered IO dialogs.

To support drag&drop, a qSlicerFileDialog derived class should reimplement:
 * qSlicerFileDialog::dragEnterEvent()
 * qSlicerFileDialog::dropEvent()

By default, qSlicerDataDialog supports drag&drop.

Issue #3081

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21904 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Add vtkProperty properties to display node

Issue #2946

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21905 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Reset BRAINSTools to build without the ITK_FUTURE_LEGACY_REMOVE

The inconsistent use of ITK_FUTURE_LEGACY_REMOVE was causing major runtime
errors with regards to virtual functions being located in different places
in the object files between compilation units.

This update also turns off many new tools that are not ready for
distribution with Slicer.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21906 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: 3084. Fixed multiple usability issues in ROI selection in Tractography Display module.
1. Changing Percentage Fibers Shown does not update display
2. Percentage Fibers Shown should update on mouse release not on drag
3. The ROI selection controls should be inactive until Fiber and ROI are selected to prompt users to select
4. Better name for ROI nodes needed
5. Tube slices do not show up on the newly created Fibers 

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21907 3bd1e089-480b-0410-8dfb-8563597acbee
STYLE: Update Models documentation

Add documentation for ctkVTKPropertyWidget properties.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21908 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: Fixed vtkMRMLModelSliceDisplayableManagerTest caused by commit 2907.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21909 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: expose layout manager methods to python

See discussion here:
http://massmail.spl.harvard.edu/public-archives/slicer-devel/2013/012255.html

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21910 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Added script to setup development environment

Setup git user profile, git hooks and general git development environment with
this script.
Removed hard configuration of push URL.
Addresses issue 2834.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21911 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Added safeguard hook to tell developer to setup environment

A placeholder pre-commit hook is installed by CMake to ensure the developer sets
up the development environment before committing any changes.
Addresses issue 2834.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21912 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Added versioning of SetupForDevelopment script

Recording the version of the development environment will help notify the
developer to re-run the SetupForDevelopment script. This can be done when there
are changes made to the environment setup scripts or to the client-side hooks.

The SetupForDevelopment script records the version of the developer setup in the
Git config file. This version is tested against the version specified in the
SetupForDevelopment script using the pre-commit hook.

This means, if there is a change in the developer setup (hooks, etc.), the
version number in the SetupForDevelopment script should be incremented to
notify other developers that they should update their setup.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21913 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: #3040 build DCMTK as shared libraries

This avoids issues where dcmtk code is statically linked into more
than one shared library, meaning that some static initialization
and destructor code is being invoked more than once.  See the bug
report for details.

http://www.na-mic.org/Bug/view.php?id=3040

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21914 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: fix typo and warning in diffusion tensor scalars

One of the command line argument parsing options was misspelled.

Also there was an extra SetInput that caused a warning message.

Thanks to Vadim vadmalis@gmail.com for pointing this out.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21915 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: Don't make qMRMLLabelComboBox a container in Qt Designer

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21916 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: Add qMRMLLabelComboBox::currentColorName

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21917 3bd1e089-480b-0410-8dfb-8563597acbee