Update 'inter.feature' argument consequences in summarizeOverlaps() man page.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomicRanges@76841 bc3139a8-67e5-0310-9ffc-ced21a209358
- Add explodeCigarOps() and explodeCigarOpLengths() low-level CIGAR utilities.
- 4x speed-up to cigarToRleList().
- Deprecate cigarToCigarTable() and summarizeCigarTable().


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomicRanges@76845 bc3139a8-67e5-0310-9ffc-ced21a209358
Merge branch 'local-hedgehog'