nightly
Merge branch 'master' of github.com:phonybone/Nof1
RnaseqBranch up and running, sorta
clean up
basic pipeline functionality working
adding file splitting classes
adding more regex line filter files
adding Babel smart client
adding lots of files
cleaning up cruft
all kinds of stuff; preparing to make a branch
adding Pipeline.py
moved host, dry_run, and working_dir to Pipeline
fixing merge conflicts
moved host, etc, to Pipeline and rearranged all parameters
prepping create branch "subprocess"
replacing execve (in run_cmd) with subprocess; redirecting stdout and stderr
getting redirection to work
adding logging
adding echo flag