Updates coverage model's repair temporal geometry

Updates coverage model reference
Updates pyon reference pointer to include latest breakpoint utility
changes
Merge pull request #1342 from lukecampbell/covwork

Updates coverage model's repair temporal geometry

Tests pass
switch simulator port from 4008 to 4009
Update ion pointer
Bump pyon pointer
New trunk version
Bump ion def pointer
fix for OOIION-1277
ooiion-1304: fix uptime and operational state for platform
Merge pull request #1345 from ooici/ooiion-1304

ooiion-1304: fix uptime and operational state for platform
kip this test: issues with delayed-stream-sim
Merge pull request #1346 from ooici/skiptest

skip this test: issues with delayed-stream-sim
Fixes the exceptions being raised by localrng qc

Part of OOIION-1319
Merge pull request #1348 from lukecampbell/loclrng-fix

Fixes the exceptions being raised by localrng qc
An int test that ensures eeagent waits for a listener before beating
Merge pull request #848 from ooici/ee_heartbeat_int_test

An int test that ensures eeagent waits for a listener before beating
Merge pull request #1343 from ooici/ooiion1277

fix for OOIION-1277
skip test_03_platforms_and_03_instruments until timeout issues are resolved. See OOIION-1322
Merge pull request #1351 from MauriceManning/skiptest_rebase

skip test_03_platforms_and_03_instruments until timeout issues are resol...
Fix OOIION-1316; intermittent test failure