Bugs fixed:
initialized anno_id at line 64 to None
condition applied at line 69: 
if severe_impacts is not None:
update docs with new ENCODE column
Merge pull request #33 from roryk/master

--header and --sep with query
require >= cyvcf 0.1.3
Merge branch 'master' of github.com:arq5x/gemini
new master
permissions back
null initial commit
just a commit
just a commit
VEP: ensembl_ids returned for genes where HGNC is None
Merge branch 'vep_gene'
prefer hgnc from vep, yet allow ensembl gene; in support of KEGG pathways
resolve issues
Merge remote-tracking branch 'upstream/master'
initial commit
aa_length and pathway tools added
Merge pull request #36 from udp3f/master

Pathway tools and files added. Changes made for including aa_length field
refactor KEGG pathway tool.
fix pyparsing deprecation warning