Changes to normalizer:
- covariates are now always orthogonalized
- fix PCA adjustment when correcting for covariates
Allow ImputeToTriTyperConverter to convert specific set of SNPs
Update README.md
Update README.md
Update README.md
Update README.md
Removed unnecessary print
Merge branch 'master' of https://github.com/Bonder-MJ/systemsgenetics
Merge pull request #145 from Bonder-MJ/master

Inclussion of rJava example and small print fix in data reading.
Remove probes with zero variance before normalizing
Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
Merge pull request #146 from harmjanwestra/master

Updates and fixes to various scripts
Merge pull request #147 from PatrickDeelen/master

See commits
Typo in package name
Addition in code in
Merge pull request #148 from Bonder-MJ/master

Typo
Zapped another gremlin
Merge pull request #149 from harmjanwestra/master

Zapped another gremlin
Changed DoubleMatrixDataset, it no longer extends DoubleMatrix2D

Removed the extention of DoubleMatrix2D. To be sure no DoubleMatrix2D
methods are useable on the DoubleMatrixDataset and no data is stored in
duplicate.
Merge pull request #151 from Bonder-MJ/master

Changed DoubleMatrixDataset, it no longer extends DoubleMatrix2D