Initial commit of mlRho version 1.8

Version 1.8 changelog  (May 25, 2012)

– Reverted to keeping all input data in memory to speed up program.
– Removed memory leaks diagnosed with valgrind.
– If \rho estimation fails the program now reports “n/a” for “not available” as the value of \rho.
– If the upper confidence limit of \rho cannot be estimated, it is set to 1, and this value is now actually
printed (before the output was 1/dist).
– Set the default maximum number of iterations in ML-estimation to 100. The previous value of 1000
resulted in time wasted on hopeless cases.
– In one of the previous versions I lost the full likelihood computation (I think inadvertently). I reinstalled
it in this version.

Changes to be committed:

	new file:   .gitignore
	new file:   LICENSE
	new file:   Makefile
	new file:   README
	new file:   TestMlDelta/Makefile
	new file:   TestMlDelta/eprintf.c
	new file:   TestMlDelta/eprintf.h
	new file:   TestMlDelta/interface.c
	new file:   TestMlDelta/interface.h
	new file:   TestMlDelta/ranNum.c
	new file:   TestMlDelta/ranNum.h
	new file:   TestMlDelta/testMlDelta.c
	new file:   TestMlPi/Makefile
	new file:   TestMlPi/README
	new file:   TestMlPi/eprintf.c
	new file:   TestMlPi/eprintf.h
	new file:   TestMlPi/interface.c
	new file:   TestMlPi/interface.h
	new file:   TestMlPi/ranNum.c
	new file:   TestMlPi/ranNum.h
	new file:   TestMlPi/testMlDiv.c
	new file:   TestMlPi/testMlPi.c
	new file:   deltaComp.c
	new file:   eprintf.c
	new file:   eprintf.h
	new file:   interface.c
	new file:   interface.h
	new file:   mlComp.c
	new file:   mlComp.h
	new file:   mlRho.c
	new file:   piComp.c
	new file:   profileTree.c
	new file:   profileTree.h
	new file:   queue.c
	new file:   queue.h
	new file:   rhoComp.c
	new file:   stringUtil.c
	new file:   stringUtil.h
	new file:   tab.c
	new file:   tab.h
	new file:   test.pro