Moved directionality code here (from legacy 'dev' repo)
Merge branch 'master' of /home/alex/MRC/shared/lib/rTMA into directionality
Correction to network GML export code
Added code for computing nets with missing data
Convert various constants to parameters
Fixed parameter passing; added maxclique timing, abort threshold opts
Updated the return values from netdiff to return summary and detail
New parameter - max cluster size for maxclique algorithm
Fix bug in logging format string
Add inferredby attribute for rule tracing
Fixed (?) rule tracking
Remove extraneous commas causing error
Another rule tagging fix
Fixed maxclique cluster abort threshold; added extra timing log info
Make sure #edges is ready for logging (bugfix for timing log output)
Remove redundant use.cache; provenance tracking for netdiff
Fix for netdiff when inferredby attribute not present
Merge latest upstream rTMA to resolve rare Gabi error
Fixes to allow adjustable MI ratio thresholds
Merge latest upstream changes