Debugged R script in the flowcell stats reports directory.  Got it to work on the cluster.
Changed the third argument of the png generation function from filepath to directory.
Added 4 more plot generating function for the flowcell report.
Went back to having the output file as input for the png generating scripts.  Also finished connecting flowcell stats reports objects and added write_list_file function in that directory.
Added code to add pipelines to flowcell_stats_report object within the transition scripts.  Am in the process of adding the funciton that send the email when a report finishes.  Still need to incorporate this into the original data_management_pipeline script though.