Install vcfutils.pl as part of samtools installation
All tar file name to be specified to the _fetch_and_unpack method
Propagate tar_file_name to _get_install* methods
Provide build target for mutect and download for cosmic VCF. Supports work on MuTect in chapmanb/bcbio-nextgen#40
Re-add accidentally removed biodata.yaml config file. Fixes chapmanb/bcbio-nextgen#53
Finished fix to allow install of packages with user-specified filenames.
Merge pull request #80 from claresloggett/master

Finished fix to allow install of packages with user-specified filenames.
Do not delete galaxy's universe_wsgi.ini used during the install
Add support for installing tools in galaxy-centric way to _get_install_local method - John Chilton's indirect contribution
On the path of removing duplicate application installation methods between applications.py and bio_nextgen.py: remove cufflinks and tophat duplicate methods
Merge branch 'master' of git://github.com/chapmanb/cloudbiolinux