Merge pull request #1 from Pcolar/master

Pull in changes
Merge pull request #2 from Pcolar/master

merge requests
Merge pull request #3 from Pcolar/master

Pull in changes
Create CONTRIBUTING.md
Update CONTRIBUTING.md
Update CONTRIBUTING.md

added more to Contributing guidelines
Update README.md

added links to getting started and contributing from README
Merge pull request #20 from eipeele/master

Added CONTRIBUTING.md.  Start to fixing issue #10. Also edited Readme
Update README.md
added a sort in the run pipeline to process in filename order
Merge pull request #21 from eipeele/master

Added link to license from Readme
Update Getting_Started.md
Update README.md
Merge pull request #22 from eipeele/master

Added information from getting started to readme
Merge pull request #4 from Pcolar/master

Update