Changing "Diagnostic" to "Analyzer" everywhere.
Correcting "a analyzer" -> "an analyzer" automatically.
Cleaning up more instances of Diagnostics -> Analyzer
Merge branch 'devel' into analyzer
Moving diagnostics directories in obj/ tree.
Moving diagnostics/ -> analyzers/ dirs in modules.
Merge branch 'devel' into analyzer

Conflicts:
	doc/notes/extensibility
Merge branch 'devel' into analyzer
Merge branch 'devel' into analyzer

Conflicts:
	src/mcMd/tests/mcSimulation/in/McSimulationAngleDihedral
	src/mcMd/tests/mcSimulation/in/out.param
Merge branch 'devel' into analyzer
Merge branch 'analyzer' into devel
Fixing inter/makefile in all object dirs.
All build configuration files now named config.mk(_r)
Editing test makefiles in src/
Editing build.dox.
Editing build.dox
Editing build system documentation.
Editing configure files
Editing doxygen comments for DdMd::Buffer class.
Editing doc comments in DdMd::NveIntegrator.