Migrated format() and variant() to Bio::Root::IO
POD update
Clone::Faster as a faster alternative to Clone. On some tests I did, Clone::Fast was over twice as fast
Moved lots of things to Base.pm, tried to figure out WrapperBase.pm
cleaned up a lot of extra debugging print statements
Per: http://www.bioperl.org/wiki/Bioperl_Best_Practices and http://modernperlbooks.com/books/modern_perl/chapter_11.html, "new Class" is to avoided. "Class->new()" should be used instead because bareword indirect invocations can lead to subtle errors
maint: make use of the latest BioPerl distzilla pluginbundle
maint: add a README file in markdown to be displayed by github
maint: move example files into a more standard location
maint: move test files 1 level down
maint: prepare for release with dist zilla, change POD to make use of its plugins
Bio::Root::Build: fix bug on strict, barewords not allowed when using strict
maint: finalize preparation for release with Dist Zilla (to pass PodCoverage, EOL and NoTabs tests)