Merge pull request #10 from FreekDB/master

Checkstyle configuration, GenerateSimulatedTic, .gitignore and todo item added
Updated high resolution logo of the CTMM TraIT project.
Added newer version of CTMM TraIT logo.
Merge branch 'master' of https://github.com/CTMM-TraIT/trait_proteomics_qc_tool
Resolved conflict after merge with master branch.
Added Javadocs, a hidden constructor, a default clause for a switch statement and finally a final keyword.