Initial setup.py for installation and dependencies.
Merge Input and Output into one object: Port.
Checkpoint before trying to merge objects for xmlread and abstract.
Expose the right objects.
Fix setup.
Overhaul workflow structures. Things are now in the right place.
Add method for checking existence of node.
Checkpoint. Marvin script for multistage namd.
Added pygraphviz graph output with subgraphs.
Just whitespace.
Restructure labels, names and strings.
Label defaults to name.
New way of dealing with names in xml conversion.
This one doesnt create a processor for every system, but uses the data
parallism of gwendia.
Create an awf from just declarations and no code. Thus, a generic multistage,
multisystem pattern.
Convert gwendia xml file into internal format.
Manifest.
Example graph outputs for discussion.
Add parameters for "input" types.