Added reference dir for Chanjo annotate
Added QCCollect
Added timestamp, added ChanjoImport, ChanjoBuild, Fixed QCCollect

- Added timestamp to mip_logg file name
- Added python virtualenvironment parameter
- Splited Chanjo into ChanjoImport and ChanjoBuild
- Created new chain "coverage report" for Chanjo calls
- Linked chanjoImportStoreFile and chanjoBuildStoreFile
- Added autovivication for ChanjoBuild when chanjoImportStoreFile is missing
- Added sampleInfoFile parameter
- Linked QCCsampleInfo default and sampleInfoFile.
- Enabled updates of sampleInfoFile to preserve unchanged program info
- Added check of sampleInfo hash nested array elements to add updated/novel elements
- Removed outheaders and outcolumn to follow changes in intersectCollect.pl
- Changed order of master template file origin creation used to select variants in rank_filter.pl
Minor changes
Merge branch 'release/release/v1.4'
Merge branch 'master' of github.com:henrikstranneheim/MIP