small tweaks
initial implementation of pubchem rest service adapter
Added comparator package. This needs to be refactored at least for a better package name.
Refactors comparator package in mdk-tool-compare
Adds Brenda parser and PseudoFingerprintChemicalNames
Moved Brenda parser.
Added CDKMoleculeBuilder and HMTLTagResolver to temporary place. These classes should be inspected later to decide what to do with them.
Adds additional comparators. Some of these should be replaced by using John's molecule hash coding classes.
Adds molecule connectivity service in lucene, according to the new MDK structure.
Adds connective component and largest connective component finder functionalities.
Adds ChEBI secondary to primary component resolver.
Adds io/text/sdf package with classes to deal at a txt level with cross-references in SDF files.
Adds connectivity search and service interfaces, as well as ChEBI and PubChem Compound Connectivity loaders at the apps level (apps service).
tidy up of comparators, some implementations were changed to match standard practice and copyright notice updated
documentation updated
removed logger and svn tags
using Collections.reverseOrder() for connective component sorting - this allows us to use the natural ordering on atom count (low to high).
correcting unit test
deprecating secondary to primary id service - normalisation not service
sp.