Issue #19: Create an abstraction layer for managing JPQL queries
Moved a number of persistence specific methods to PersistenceUtil.
Issue #19: Create an abstraction layer for managing JPQL queries
Updated some of the queries and fixed some typos.
Issue #19: Create an abstraction layer for managing JPQL queries
Misc fixes.
Issue #19: Create an abstraction layer for managing JPQL queries
Fixed a typo for the login process.
Issue #42: Add Solr indexing support for non-variant entities
Added gene set fields to the gene and changed the way gene sets are retrieved.
Issue #19: Create an abstraction layer for managing JPQL queries
Added more methods to PersistenceEngineUtil.
Issue #42: Add Solr indexing support for non-variant entities
Added reference id and contig id to the chromosome entity.
Issue #42: Add Solr indexing support for non-variant entities
Changed queries responsible for indexing genes to call the abstraction layer.
Issue #42: Add Solr indexing support for non-variant entities
Misc changes and fixes for the model classes.
Issue #33: Add JQPL to Solr query translator
Fix a bug which deleted more entity types than the needed one.
Issue #33: Add JQPL to Solr query translator
Allow multi-valued fields to be updated.
Issue #42: Add Solr indexing support for non-variant entities
Fixed the way multi valued fields are indexed
Issue #42: Add Solr indexing support for non-variant entities
Added autocommit to the solr service.
Issue #42: Add Solr indexing support for non-variant entities
Propagated exceptions.
Issue #15: Add Solr indexing support for variants
Abstracted variant import logic.
Issue #42: Add Solr indexing support for non-variant entities
Misc fixes.
Issue #15: Add Solr indexing support for variants
Misc fixes.
Issue #19: Create an abstraction layer for managing JPQL queries
Added entity import from TSV file.
Issue #42: Add Solr indexing support for non-variant entities
Misc fixes to adapter classes.
Issue #15: Add Solr indexing support for variants
Changed postion type.