removed
added owl file processing
initial refseq r3 import
finished run and constructor
finished r3 refseq parser
added test class
added pdb.php executer
started pdb2rdf runner for runparser.php
fixes: changed to new style class instantiation for quad store
fixed: correct imports php-lib/bio2rdfapi.php for Bio2RDFizer parent class
fixed: now importing the correct php-lib module, bio2rdfapi.php, from the bio2rdfapi branch of php-lib
fixed bug in main class
finished php bio2rdfizer, modified .sh
minor fix
modified dataset uri
Merge pull request #322 from jctoledo/pdb-r3

Pdb r3 update
Merge pull request #319 from jctoledo/refseq-r3

Refseq r3
fixed problem with chemicalComponents not being added to the model
Merge pull request #323 from jctoledo/pdb-r3

Pdb R3 hotfix
updated: added port parameter for SQL connection